gtdbtk.log

The console output of GTDB-Tk saved to disk.

Produced by

• align

• ani_rep

• align

• classify

• classify_wf

• de_novo_wf

• identify

• infer

Example

[2020-04-14 09:14:44] INFO: GTDB-Tk v1.1.0
[2020-04-14 09:14:44] INFO: gtdbtk align --identify_dir identify_output/ --out_dir align_output --cpus 3
[2020-04-14 09:14:44] INFO: Using GTDB-Tk reference data version r89: /release89
[2020-04-14 09:14:44] INFO: Aligning markers in 3 genomes with 3 threads.
[2020-04-14 09:14:44] INFO: Processing 3 genomes identified as archaeal.
[2020-04-14 09:14:44] INFO: Read concatenated alignment for 1248 GTDB genomes.
[2020-04-14 09:14:49] INFO: Masking columns of multiple sequence alignment using canonical mask.