mash_distances.msh

The raw output of the distance from each genome to the GTDB-Tk reference genomes as determined by Mash.

Example

/path/to/gtdbtk_package/release214/skani/database/GCF/000/226/295/GCF_000226295.1_genomic.fna.gz 2010170002_1.fna.gz 0.140234 0 280/5000 /path/to/gtdbtk_package/release214/skani/database/GCF/018/304/765/GCF_018304765.1_genomic.fna.gz 2010170002_1.fna.gz 0.143722 0 264/5000 /path/to/gtdbtk_package/release214/skani/database/GCF/000/011/905/GCF_000011905.1_genomic.fna.gz 2013843002_3.fna.gz 0.120075 0 395/5000 /path/to/gtdbtk_package/release214/skani/database/GCF/000/830/885/GCF_000830885.1_genomic.fna.gz 2013843002_3.fna.gz 0.0113383 0 3577/5000 /path/to/gtdbtk_package/release214/skani/database/GCF/001/889/305/GCF_001889305.1_genomic.fna.gz 2013843002_3.fna.gz 0.123871 0 370/5000 /path/to/gtdbtk_package/release214/skani/database/GCA/015/295/985/GCA_015295985.1_genomic.fna.gz 2014031006_1.fna.gz 0.0748498 0 889/5000 /path/to/gtdbtk_package/release214/skani/database/GCF/000/013/205/GCF_000013205.1_genomic.fna.gz 2014031006_1.fna.gz 0.129151 0 338/5000 /path/to/gtdbtk_package/release214/skani/database/GCF/000/013/225/GCF_000013225.1_genomic.fna.gz 2014031006_1.fna.gz 0.0242123 0 2569/5000 /path/to/gtdbtk_package/release214/skani/database/GCF/000/516/515/GCF_000516515.1_genomic.fna.gz 2022920003_1.fna.gz 0.0949923 0 614/5000 /path/to/gtdbtk_package/release214/skani/database/GCF/000/735/195/GCF_000735195.1_genomic.fna.gz 2022920003_1.fna.gz 0.0279099 0 2352/5000 /path/to/gtdbtk_package/release214/skani/database/GCA/000/980/735/GCA_000980735.1_genomic.fna.gz 2029527001_1.fna.gz 0.023154 0 2636/5000 /path/to/gtdbtk_package/release214/skani/database/GCA/002/420/705/GCA_002420705.1_genomic.fna.gz 2029527003_1.fna.gz 0.0879852 0 697/5000 /path/to/gtdbtk_package/release214/skani/database/GCA/002/454/415/GCA_002454415.1_genomic.fna.gz 2029527003_1.fna.gz 0.1472 0 249/5000 /path/to/gtdbtk_package/release214/skani/database/GCA/002/500/745/GCA_002500745.1_genomic.fna.gz 2029527003_1.fna.gz 0.14768 0 247/5000