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Getting started

  • Announcements
  • Installing GTDB-Tk
  • FAQ

Running GTDB-Tk

  • Performance and Accuracy
  • Commands
    • align
    • ani_rep
    • check_install
    • classify
    • classify_wf
    • convert_to_itol
    • convert_to_species
    • de_novo_wf
    • decorate
    • export_msa
    • identify
    • infer
    • infer_ranks
    • remove_labels
    • root
    • test
    • trim_msa
  • Files
  • Example

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  • References
GTDB-Tk
  • Commands
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Commands

Below is a list of all GTDB-Tk command line options:

  • align
  • ani_rep
  • check_install
  • classify
  • classify_wf
  • convert_to_itol
  • convert_to_species
  • de_novo_wf
  • decorate
  • export_msa
  • identify
  • infer
  • infer_ranks
  • remove_labels
  • root
  • test
  • trim_msa
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