Files

The following files are output by GTDB-Tk throughout various stages of the pipeline:

• ani_closest.tsv
• ani_summary.tsv
• classification_pplacer.tsv
• classify.tree
• fasttree.log
• filtered.tsv
• gtdbtk.log
• gtdbtk.warnings.log
• gtdbtk_ref_sketch.msh
• marker_info.tsv
• markers_summary.tsv
• mash_distances.msh
• msa.fasta
• pfam.tsv
• pfam_tophit.tsv
• pplacer.<domain>.json
• pplacer.<domain>.out
• prodigal_translation_table.tsv
• protein.faa
• protein.fna
• protein.gff
• red_dictionary.tsv
• summary.tsv
• test_execution.log
• tigrfam.out
• tigrfam.tsv
• tigrfam_tophit.tsv
• translation_table_summary.tsv
• tree.log
• unrooted.tree
• user_msa.fasta
• user_query_sketch.msh
• tree.mapping.tsv
• gtdbtk.json
• failed.genomes.tsv