classification_pplacer.tsv

The classification of query genomes based only on their placement in the reference tree.

[prefix].ar53.classification_pplacer.tsv, [prefix].bac120.class_level.classification_pplacer_tree_[index].tsv and, with --full_tree, [prefix].bac120.classification_pplacer.tsv: two tab-separated columns without a header, the genome identifier and the taxonomy from its placement (first example below).
[prefix].bac120.backbone.classification_pplacer.tsv (split mode): placement on the bacterial backbone tree, with a header and the columns user_genome, gtdb_taxonomy_red, gtdb_taxonomy_terminal, pplacer_taxonomy, is_terminal and red.

Produced by

classify

classify_wf

Example

genome_2    d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__VadinCA11;s__
genome_3    d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__VadinCA11;s__
genome_1    d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter;s__