infer

Infer tree from multiple sequence alignment.

Arguments

## Files output

• [prefix].log

• [prefix].unrooted.tree

• [prefix].warnings.log

• infer/intermediate_results/

  • [prefix].fasttree.log

  • [prefix].tree.log

Example

Input

gtdbtk infer --msa_file msa.faa --out_dir infer_out

Output

[2020-04-14 09:37:55] INFO: GTDB-Tk v1.1.0
[2020-04-14 09:37:55] INFO: gtdbtk infer --msa_file msa.faa --out_dir infer_out
[2020-04-14 09:37:55] INFO: Using GTDB-Tk reference data version r89: /release89
[2020-04-14 09:37:55] INFO: Inferring FastTree (WAG, +gamma, support) using a maximum of 1 CPUs.
[2020-04-14 09:37:55] INFO: FastTree version: 2.1.10
[2020-04-14 09:37:55] INFO: FastTree version: 2.1.10
[2020-04-14 09:37:55] INFO: Done.