convert_to_itol

The convert_to_itol command will remove internal labels from Newick tree, making it suitable for visualization in iTOL.

Arguments

usage: gtdbtk convert_to_itol --input_tree INPUT_TREE --output_tree
                              OUTPUT_TREE [--debug] [-h]

required named arguments

--input_tree

path to the unrooted tree in Newick format

--output_tree

path to output the tree

Named Arguments

--debug

create intermediate files for debugging purposes

Example

Input

gtdbtk convert_to_itol --input some_tree.tree --output itol.tree

Output

[2022-06-30 18:44:54] INFO: GTDB-Tk v2.1.0
[2022-06-30 18:44:54] INFO: gtdbtk convert_to_itol --input /tmp/decorated.tree --output new.tree
[2022-06-30 18:44:54] INFO: Using GTDB-Tk reference data version r207: /gtdbtk-data
[2022-06-30 18:44:54] INFO: Convert GTDB-Tk tree to iTOL format
[2022-06-30 18:44:54] INFO: Done.