root

Root a tree using an outgroup.

Arguments

Example

Input

gtdbtk root --input_tree input.tree --outgroup_taxon p__Nanoarchaeota --output_tree output.tree

Output

[2020-04-14 08:26:53] INFO: GTDB-Tk v1.1.0
[2020-04-14 08:26:53] INFO: gtdbtk root --input_tree input.tree --outgroup_taxon p__Nanoarchaeota --output_tree output.tree
[2020-04-14 08:26:53] INFO: Using GTDB-Tk reference data version r89: /release89
[2020-04-14 08:26:53] INFO: Identifying genomes from the specified outgroup.
[2020-04-14 08:26:53] INFO: Identified 101 outgroup taxa in the tree.
[2020-04-14 08:26:53] INFO: Identified 1151 ingroup taxa in the tree.
[2020-04-14 08:26:53] INFO: Outgroup is monophyletic.
[2020-04-14 08:26:53] INFO: Rerooting tree.
[2020-04-14 08:26:53] INFO: Rerooted tree written to: output.tree
[2020-04-14 08:26:53] INFO: Done.