export_msa

The export_msa will export the untrimmed archaeal or bacterial MSA used in the reference data.

Arguments

usage: gtdbtk export_msa --domain {arc,bac} --output OUTPUT [--debug] [-h]

required named arguments

--domain

Possible choices: arc, bac

domain to export

--output

output file

optional arguments

--debug: create intermediate files for debugging purposes

Example

Input

gtdbtk export_msa --domain arc --output /tmp/msa.faa

Output

[2020-04-13 10:03:05] INFO: GTDB-Tk v1.1.0
[2020-04-13 10:03:05] INFO: gtdbtk export_msa --domain arc --output /tmp/msa.faa
[2020-04-13 10:03:05] INFO: Using GTDB-Tk reference data version r89: /release89
[2020-04-13 10:03:05] INFO: Done.