test¶

The test command is used to run three small archaeal genomes through the classify workflow.

If your installation is unable to run the test command with an exit code of 0, then there is an issue with your installation.

Arguments¶

Files output¶

Example¶

Input¶

gtdbtk test --out_dir /tmp/test --cpus 3

Output¶

[2020-04-13 09:50:58] INFO: GTDB-Tk v1.1.0
[2020-04-13 09:50:58] INFO: gtdbtk test --out_dir /tmp/test --cpus 3
[2020-04-13 09:50:58] INFO: Using GTDB-Tk reference data version r89: /release89
[2020-04-13 09:50:58] INFO: Command: gtdbtk classify_wf --genome_dir /tmp/test/genomes --out_dir /tmp/test/output --cpus 3
[2020-04-13 09:52:35] INFO: Test has successfully finished.