Module cWrapper

Author: Michael Imelfort

License: LGPLv3

Classes

RPI

BM_mappedRead_C
typedef struct BM_mappedRead {...

BM_linkInfo_C
typedef struct {...

BM_linkPair_C
typedef struct {...

BM_LinkWalker_C
typedef struct {...

BM_bamType_C
typedef struct BM_bamType {...

BM_bamFile_C
typedef struct BM_bamFile {...

BM_coverageType_C
typedef struct BM_coverageType {...

BM_fileInfo_C
typedef struct BM_fileInfo {...

CWrapper
Multiprocessing can't pickle cTypes pointers and functions.

Functions

enum(*sequential, **named)

source code

RPI2Str(rpi)
Convert an RPI into a human readable string

source code

MI2Str(mi)
Convert an MI into a human readable string

source code

OT2Str(ot)
Convert an orientation type into a human readable string

source code

CT2Str(ct)
Convert a CT into a human readable string

source code

Variables

__credits__ = ['Michael Imelfort']

__maintainer__ = 'Michael Imelfort'

__email__ = 'mike@mikeimelfort.com'

RPIConv = {0: 0, 1: 1, 2: 2, 3: 5, 4: 5, 5: 5}

__package__ = 'bamm'

Function Details

Convert an RPI into a human readable string

Inputs:
 rpi - RPI to convert

Outputs:
 Human readable string

Convert an MI into a human readable string

Inputs:
 mi - MI to convert

Outputs:
 Human readable string

Convert an orientation type into a human readable string

Inputs:
 ot - OT to convert

Outputs:
 Human readable string

Convert a CT into a human readable string

Inputs:
 ct - CT to convert

Outputs:
 Human readable string