Package bamm :: Module cWrapper :: Class BM_mappedRead_C

Class BM_mappedRead_C

   object --+        
            |        
    ??._CData --+    
                |    
_ctypes.Structure --+
                    |
                   BM_mappedRead_C


typedef struct BM_mappedRead {
    char * seqId,
    char * seq,
    char * qual,
    uint16_t idLen,
    uint16_t seqLen,
    uint16_t qualLen,
    uint8_t rpi,
    uint8_t mi,
    uint16_t group,
    BM_mappedRead * nextRead,
    BM_mappedRead * partnerRead,
    BM_mappedRead * nextPrintingRead
} BM_mappedRead;

Instance Methods

[hide private]

Inherited from _ctypes.Structure: __init__, __new__

Inherited from unreachable._CData: __ctypes_from_outparam__, __hash__, __reduce__, __setstate__

Inherited from object: __delattr__, __format__, __getattribute__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables

[hide private]

_fields_ = [('seqId', <class 'ctypes.LP_c_char'>), ('seq', <cl...

group = <Field type=c_ushort, ofs=32, size=2>

idLen = <Field type=c_ushort, ofs=24, size=2>

mi = <Field type=c_ubyte, ofs=31, size=1>

nextPrintingRead = <Field type=LP_BM_mappedRead_C, ofs=56, siz...

nextRead = <Field type=LP_BM_mappedRead_C, ofs=40, size=8>

partnerRead = <Field type=LP_BM_mappedRead_C, ofs=48, size=8>

qual = <Field type=LP_c_char, ofs=16, size=8>

qualLen = <Field type=c_ushort, ofs=28, size=2>

rpi = <Field type=c_ubyte, ofs=30, size=1>

seq = <Field type=LP_c_char, ofs=8, size=8>

seqId = <Field type=LP_c_char, ofs=0, size=8>

seqLen = <Field type=c_ushort, ofs=26, size=2>

Properties

[hide private]

Inherited from unreachable._CData: _b_base_, _b_needsfree_

Inherited from unreachable._CData (private): _objects

Inherited from object: __class__

Class Variable Details

[hide private]

_fields_

Value:

[('seqId', <class 'ctypes.LP_c_char'>),
 ('seq', <class 'ctypes.LP_c_char'>),
 ('qual', <class 'ctypes.LP_c_char'>),
 ('idLen', <class 'ctypes.c_ushort'>),
 ('seqLen', <class 'ctypes.c_ushort'>),
 ('qualLen', <class 'ctypes.c_ushort'>),
 ('rpi', <class 'ctypes.c_ubyte'>),
 ('mi', <class 'ctypes.c_ubyte'>),
...

nextPrintingRead

Value:

<Field type=LP_BM_mappedRead_C, ofs=56, size=8>