Package bamm :: Module cWrapper :: Class BM_fileInfo_C

Class BM_fileInfo_C

   object --+        
            |        
    ??._CData --+    
                |    
_ctypes.Structure --+
                    |
                   BM_fileInfo_C


typedef struct BM_fileInfo {
    float ** coverages;
    uint32_t * contigLengths;
    uint32_t numBams;
    uint32_t numContigs;
    BM_bamFile ** bamFiles;
    char ** contigNames;
    uint16_t * contigNameLengths;
    int isLinks;
    BM_coverageType * coverageType;
    int isIgnoreSupps;
    cfuhash_table_t * links;
} BM_fileInfo;

Instance Methods

[hide private]

Inherited from _ctypes.Structure: __init__, __new__

Inherited from unreachable._CData: __ctypes_from_outparam__, __hash__, __reduce__, __setstate__

Inherited from object: __delattr__, __format__, __getattribute__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables

[hide private]

_fields_ = [('coverages', <class 'bamm.cWrapper.LP_LP_c_float'...

bamFiles = <Field type=LP_LP_BM_bamFile_C, ofs=24, size=8>

contigLengths = <Field type=LP_c_uint, ofs=8, size=8>

contigNameLengths = <Field type=LP_c_ushort, ofs=40, size=8>

contigNames = <Field type=LP_LP_c_char, ofs=32, size=8>

coverageType = <Field type=LP_BM_coverageType_C, ofs=56, size=8>

coverages = <Field type=LP_LP_c_float, ofs=0, size=8>

isIgnoreSupps = <Field type=c_int, ofs=64, size=4>

isLinks = <Field type=c_int, ofs=48, size=4>

links = <Field type=LP_cfuhash_table_t, ofs=72, size=8>

numBams = <Field type=c_uint, ofs=16, size=4>

numContigs = <Field type=c_uint, ofs=20, size=4>

Properties

[hide private]

Inherited from unreachable._CData: _b_base_, _b_needsfree_

Inherited from unreachable._CData (private): _objects

Inherited from object: __class__

Class Variable Details

[hide private]

_fields_

Value:

[('coverages', <class 'bamm.cWrapper.LP_LP_c_float'>),
 ('contigLengths', <class 'bamm.cWrapper.LP_c_uint'>),
 ('numBams', <class 'ctypes.c_uint'>),
 ('numContigs', <class 'ctypes.c_uint'>),
 ('bamFiles', <class 'bamm.cWrapper.LP_LP_BM_bamFile_C'>),
 ('contigNames', <class 'bamm.cWrapper.LP_LP_c_char'>),
 ('contigNameLengths', <class 'bamm.cWrapper.LP_c_ushort'>),
 ('isLinks', <class 'ctypes.c_int'>),
...