Package bamm :: Module bamMaker

[frames] | no frames]

Module bamMaker

Author: Michael Imelfort, Ben Woodcroft

Copyright: Copyright 2014

License: LGPLv3

Classes

BamScheduler
Class for scheduling making multiple BAM and TAM files

BamMaker
Class that wraps bwa and samtools.

Functions

checkForDatabase(databaseBaseName)
Check to see if bwa indexed database is present

source code

Variables

__credits__ = ['Michael Imelfort', 'Ben Woodcroft']

__maintainer__ = 'Michael Imelfort'

__email__ = 'mike@mikeimelfort.com'

__package__ = 'bamm'

Function Details

checkForDatabase(databaseBaseName)

Check to see if bwa indexed database is present

Inputs:
 databaseBaseName - string, full path to the prefix of the DB

Outputs:
 True if database files exists, false otherwise