Package bamm :: Module bamFile :: Class BM_coverageType

Class BM_coverageType

object --+
         |
        BM_coverageType

Container class for storing the type of coverage to calculate

Instance Methods

[hide private]

__init__(self, cType, cUpper, cLower)
Default constructor.

source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, cType, cUpper, cLower)
(Constructor)

source code


Default constructor.

Inputs:
 cType -  enum, from the CT enum (see cWrapper.py)
 cUpper - float, percent of coverage values or number of stdevs. used
          to determine upper cutoff when calculating coverage values
 cLower - float, percent of coverage values or number of stdevs. used
          to determine lower cutoff when calculating coverage values

Outputs:
 None

Overrides: object.__init__

Class BM_coverageType

__init__(self, cType, cUpper, cLower) (Constructor)

init(self, cType, cUpper, cLower)
(Constructor)