Package bamm :: Module bamFile :: Class BM_bamType

Class BM_bamType

object --+
         |
        BM_bamType

Container class for Storing information about the inserts and orientation types of a BAM file

Instance Methods

[hide private]

__init__(self, orientationType=3, insertSize=0.0, insertStdev=0.0, supporting=0)
Default constructor.

source code

__str__(self)
override basic string function

source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __subclasshook__

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, orientationType=3, insertSize=0.0, insertStdev=0.0, supporting=0)
(Constructor)

source code


Default constructor.

Inputs:
 orientationType - enum, from the OT enum (see cWrapper.py)
 insertSize - float, estimated mean template size for the library
 insertStdev - float, estimated stdev of the template size
 supporting - int, number or reads used to define stats

Outputs:
 None

Overrides: object.__init__

str(self)
(Informal representation operator)

source code

override basic string function

Overrides: object.__str__

Class BM_bamType

__init__(self, orientationType=3, insertSize=0.0, insertStdev=0.0, supporting=0) (Constructor)

__str__(self) (Informal representation operator)

init(self, orientationType=3, insertSize=0.0, insertStdev=0.0, supporting=0)
(Constructor)

str(self)
(Informal representation operator)