gtdblib.util package

Subpackages

• gtdblib.util.bio package
  • Submodules
  • gtdblib.util.bio.accession module
    • canonical_gid()
    • is_same_accn_version()
  • gtdblib.util.bio.exceptions module
    • BioError
  • gtdblib.util.bio.newick module
    • create_label()
    • parse_label()
  • gtdblib.util.bio.seq_io module
    • InputFileError
    • extract_seqs()
    • is_nucleotide()
    • is_protein()
    • read()
    • read_fasta()
    • read_fasta_seq()
    • read_fastq()
    • read_fastq_seq()
    • read_seq()
    • seq_lengths()
    • write_fasta()
  • Module contents
• gtdblib.util.shell package
  • Submodules
  • gtdblib.util.shell.color module
    • hex_to_rgb()
    • rgb_to_hex()
  • gtdblib.util.shell.execute module
    • check_dependencies()
    • check_on_path()
    • is_executable()
    • run()
    • run_bash()
    • which()
  • gtdblib.util.shell.filemgmt module
    • matching_brackets()
    • select_delimiter()
    • sha256()
    • sha256_rb()
  • gtdblib.util.shell.gtdbshutil module
    • check_dir_exists()
    • check_file_exists()
    • get_num_lines()
    • make_sure_path_exists()
    • symlink()
  • Module contents

Submodules

gtdblib.util.color module

gtdblib.util.color.rgb_to_hex(r: int, g: int, b: int) → str

gtdblib.util.types module

gtdblib.util.types.is_float(s) → bool

Check if a string can be converted to a float.

Parameters:

s – Any object to convert to a float.

Module contents